gap (1.2.2)

1 user

Genetic Analysis Package.

It is designed as an integrated package for genetic data analysis of both population and family data. Currently, it contains functions for sample size calculations of both population-based and family-based designs, probability of familial disease aggregation, kinship calculation, statistics in linkage analysis, and association analysis involving genetic markers including haplotype analysis with or without environmental covariates.

Maintainer: Jing Hua Zhao
Author(s): Jing Hua Zhao and colleagues with inputs from Kurt Hornik and Brian Ripley

License: GPL (>= 2)

Uses: Matrix, calibrate, coda, foreign, haplo.stats, lattice, magic, meta, nlme, plotrix, regress, reshape, rmeta, survival, MCMCglmm, R2jags, matrixStats, pedigree, pedigreemm, rms, bdsmatrix, coxme, MASS, BradleyTerry2, kinship2, mets, circlize, dplyr, qqman, forestplot, gap.datasets
Reverse depends: PopGenReport, snpXpert
Reverse suggests: BayesianTools, rehh

Released 4 months ago.

24 previous versions



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Related packages: adegenet, ape, Biodem, bqtl, dlmap, genetics, hapassoc, HardyWeinberg, haplo.stats, hwde, ibdreg, LDheatmap, ouch, pbatR, phangorn, qtl, rmetasim, seqinr, SNPmaxsel, snp.plotter(20 best matches, based on common tags.)

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