hapassoc (1.2-8)

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Inference of Trait Associations with SNP Haplotypes and Other Attributes using the EM Algorithm.


The following R functions are used for inference of trait associations with haplotypes and other covariates in generalized linear models. The functions are developed primarily for data collected in cohort or cross-sectional studies. They can accommodate uncertain haplotype phase and handle missing genotypes at some SNPs.

Maintainer: Kelly Burkett
Author(s): K. Burkett <kburkett@uottawa.ca>, B. McNeney <mcneney@sfu.ca>, J. Graham <jgraham@stat.sfu.ca>, with code for case-control data contributed by Zhijian Chen <z11chen@math.uwaterloo.ca>

License: GPL-2

Uses: Does not use any package
Reverse depends: LBLGXE

Released about 5 years ago.

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Related packages: Biodem, HardyWeinberg, LDheatmap, SNPmaxsel, adegenet, bqtl, gap, genetics, haplo.stats, hierfstat, hwde, ibdreg, ouch, pbatR, qtl, rmetasim, seqinr, snp.plotter, tdthap, untb(20 best matches, based on common tags.)

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